Innate Immunity in Heart, Lung and Blood Disease
Programs for Genomic Applications
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Related documents:
- Phase output blocks
- See corresponding data for another gene
| Haplotype counts inferred by Phase*. |
| Gene = CARD4, Minimum allele freq. in ANY population= 0.000, 7 SNP, 239 Subjects |
| Note that the haplotypes shown below comprise alleles at |
| the following SNP locations in the order show. The first column |
| is the allele position in the haplotype. The SNP column is the |
| SNP position in the reference sequence (1=first base). The RelativeOffset column |
| is the SNP offset relative to the Gene transcription start codon. |
| # | SNP | RelativeOffset |
| 1 | 2425 | -21596 |
| 2 | 3087 | -3038 |
| 3 | 3211 | -2914 |
| 4 | 4457 | -171 |
| 5 | 8017 | 5224 |
| 6 | 11308 | 10794 |
| 7 | 15868 | 28319 |
| Haplotype Frequency Sort Order | |||||||
| Haplotype | All | Controls | Cases | ||||
| TATAGTG | 172 | 36.0% | 109 | 34.5% | 63 | 38.9% | |
| TACAGCG | 78 | 16.3% | 58 | 18.4% | 20 | 12.3% | |
| CGTGATG | 58 | 12.1% | 32 | 10.1% | 26 | 16.0% | |
| CGTAGTG | 28 | 5.9% | 21 | 6.6% | 07 | 4.3% | |
| CGTGATA | 21 | 4.4% | 15 | 4.7% | 06 | 3.7% | |
| CGTGACG | 20 | 4.2% | 12 | 3.8% | 08 | 4.9% | |
| TACAGTG | 15 | 3.1% | 12 | 3.8% | 03 | 1.9% | |
| TGTGATA | 14 | 2.9% | 08 | 2.5% | 06 | 3.7% | |
| TATGGTG | 14 | 2.9% | 08 | 2.5% | 06 | 3.7% | |
| TATAGTA | 08 | 1.7% | 07 | 2.2% | 01 | 0.6% | |
| CGTGACA | 08 | 1.7% | 07 | 2.2% | 01 | 0.6% | |
| TGTGATG | 06 | 1.3% | 05 | 1.6% | 01 | 0.6% | |
| TATAGCG | 05 | 1.0% | 05 | 1.6% | 00 | 0.0% | |
| TATGATA | 04 | 0.8% | 04 | 1.3% | 00 | 0.0% | |
| TATAATG | 04 | 0.8% | 04 | 1.3% | 00 | 0.0% | |
| TACAGCA | 04 | 0.8% | 00 | 0.0% | 04 | 2.5% | |
| CATGATG | 04 | 0.8% | 04 | 1.3% | 00 | 0.0% | |
| TACGGCG | 03 | 0.6% | 02 | 0.6% | 01 | 0.6% | |
| CGTGGTG | 03 | 0.6% | 01 | 0.3% | 02 | 1.2% | |
| TACGATG | 02 | 0.4% | 00 | 0.0% | 02 | 1.2% | |
| CGTGGCA | 02 | 0.4% | 02 | 0.6% | 00 | 0.0% | |
| CATAGTG | 02 | 0.4% | 00 | 0.0% | 02 | 1.2% | |
| TGTGACG | 01 | 0.2% | 00 | 0.0% | 01 | 0.6% | |
| TGTGACA | 01 | 0.2% | 00 | 0.0% | 01 | 0.6% | |
| CATGGTG | 01 | 0.2% | 00 | 0.0% | 01 | 0.6% | |
| Totals | 478 | 316 | 162 | ||||
| Haplotype Alphabetic Sort Order | |||||||
| CATAGTG | 02 | 0.4% | 00 | 0.0% | 02 | 1.2% | |
| CATGATG | 04 | 0.8% | 04 | 1.3% | 00 | 0.0% | |
| CATGGTG | 01 | 0.2% | 00 | 0.0% | 01 | 0.6% | |
| CGTAGTG | 28 | 5.9% | 21 | 6.6% | 07 | 4.3% | |
| CGTGACA | 08 | 1.7% | 07 | 2.2% | 01 | 0.6% | |
| CGTGACG | 20 | 4.2% | 12 | 3.8% | 08 | 4.9% | |
| CGTGATA | 21 | 4.4% | 15 | 4.7% | 06 | 3.7% | |
| CGTGATG | 58 | 12.1% | 32 | 10.1% | 26 | 16.0% | |
| CGTGGCA | 02 | 0.4% | 02 | 0.6% | 00 | 0.0% | |
| CGTGGTG | 03 | 0.6% | 01 | 0.3% | 02 | 1.2% | |
| TACAGCA | 04 | 0.8% | 00 | 0.0% | 04 | 2.5% | |
| TACAGCG | 78 | 16.3% | 58 | 18.4% | 20 | 12.3% | |
| TACAGTG | 15 | 3.1% | 12 | 3.8% | 03 | 1.9% | |
| TACGATG | 02 | 0.4% | 00 | 0.0% | 02 | 1.2% | |
| TACGGCG | 03 | 0.6% | 02 | 0.6% | 01 | 0.6% | |
| TATAATG | 04 | 0.8% | 04 | 1.3% | 00 | 0.0% | |
| TATAGCG | 05 | 1.0% | 05 | 1.6% | 00 | 0.0% | |
| TATAGTA | 08 | 1.7% | 07 | 2.2% | 01 | 0.6% | |
| TATAGTG | 172 | 36.0% | 109 | 34.5% | 63 | 38.9% | |
| TATGATA | 04 | 0.8% | 04 | 1.3% | 00 | 0.0% | |
| TATGGTG | 14 | 2.9% | 08 | 2.5% | 06 | 3.7% | |
| TGTGACA | 01 | 0.2% | 00 | 0.0% | 01 | 0.6% | |
| TGTGACG | 01 | 0.2% | 00 | 0.0% | 01 | 0.6% | |
| TGTGATA | 14 | 2.9% | 08 | 2.5% | 06 | 3.7% | |
| TGTGATG | 06 | 1.3% | 05 | 1.6% | 01 | 0.6% | |
| Totals | 478 | 316 | 162 | ||||
Minimal SNP (shown in red italics) needed to unambiguously distinguish haplotypes seen more than once, by population group
Please note that this an experimental resource which is still under test.Please email Ross Lazarus if you have comments or find any errors or anomalies
Group=Cases (blocklist=[[1, 8]], snplist=[[1, 2, 3, 4, 5, 6, 7]])
Haplotype heterozygosity: Observed = 0.7976680, Expected = 0.9805096
Effective # Haplotypes = 4.942, Minimum #SNP to distinguish haplotypes seen more than once: 7
| -21596: | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | C | C | C | C | T | T | T | T | T | C | C |
| -3038: | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | G | G | A | A | G | G | G | A | A | G | A |
| -2914: | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | C | T | T |
| -171: | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | G | G | G | G | A | A | G | G | G | A | G | G | G |
| 5224: | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | A | A | A | A | A | A | G | G | G | G | G | G | A | A | A | A | A | A | G | G | G | G | G | G | G | A | A | G | G | G | G | A | A | A | G | G | A | G |
| 10794: | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | T | T | T | T | T | T | T | T | T | T | C | C | T | C | C | T |
| 28319: | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | A | A | G | A | G |
Haplotype heterozygosity: Observed = 0.8241868, Expected = 0.9785545
Effective # Haplotypes = 5.688, Minimum #SNP to distinguish haplotypes seen more than once: 7
| -21596: | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | T | T | C | C | C |
| -3038: | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G |
| -2914: | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C | T | T | T |
| -171: | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | A | A | A | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | A | A | A | A | A | G | G | G | < |