 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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| Prettybase importer |
| Gene: |
CCL2 |
Region searched: |
chr17:32717848-32739768 |
| Match orientation: |
Forward |
Processing time: |
0.59 seconds |
| Total SNPs: |
23 |
Correct: |
23 |
|
|
| Imported SNPs |
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 2661 |
chr17:32725508 |
-2411 C/G |
|
G (86) |
C (4) |
|
|
4% |
G |
G |
rs3917903 |
IIPGA-CCL2-2661 |
| 2934 |
chr17:32725781 |
-2138 A/T |
|
A (81) |
T (13) |
|
|
14% |
T |
T |
rs1024610 |
IIPGA-CCL2-2934 |
| 2938 |
chr17:32725785 |
-2134 G/T |
|
T (92) |
G (2) |
|
|
2% |
T |
T |
rs3917885 |
IIPGA-CCL2-2938 |
| 3261 |
chr17:32726108 |
-1811 A/G |
|
A (90) |
G (4) |
|
|
4% |
A |
A |
rs3760399 |
IIPGA-CCL2-3261 |
| 3345 |
chr17:32726192 |
-1727 A/T |
|
T (93) |
A (1) |
|
|
1% |
T |
T |
rs3917886 |
IIPGA-CCL2-3345 |
| 3523 |
chr17:32726370 |
-1549 A/T |
|
A (87) |
T (7) |
|
|
7% |
A |
A |
rs3091332 |
IIPGA-CCL2-3523 |
| 3955 |
chr17:32726802 |
-1117 A/T |
|
T (89) |
A (3) |
|
|
3% |
T |
T |
rs2857655 |
IIPGA-CCL2-3955 |
| 4144 |
chr17:32726991 |
-928 C/G |
|
G (73) |
C (13) |
|
|
14% |
G |
G |
rs3760396 |
IIPGA-CCL2-4144 |
| 4673 |
chr17:32727520 |
-399 A/T |
|
T (93) |
A (1) |
|
|
1% |
T |
T |
rs3917904 |
IIPGA-CCL2-4673 |
| 4710 |
chr17:32727557 |
-362 C/G |
|
G (70) |
C (24) |
|
|
26% |
G |
G |
rs2857656 |
IIPGA-CCL2-4710 |
| 5244 |
chr17:32728091 |
172 C/G |
|
C (93) |
G (1) |
|
|
1% |
C |
C |
IIPGA-CCL2-5244 |
IIPGA-CCL2-5244 |
| 5702 |
chr17:32728549 |
630 A |
|
A (71) |
X (23) |
|
|
24% |
A |
A |
IIPGA-CCL2-5702 |
IIPGA-CCL2-5702 |
| 5835 |
chr17:32728682 |
763 C/G |
|
C (81) |
G (13) |
|
|
14% |
G |
G |
rs2857657 |
IIPGA-CCL2-5835 |
| 5972 |
chr17:32728819 |
900 C/T |
35 C/C |
T (50) |
C (44) |
|
|
47% |
T |
T |
rs4586 |
IIPGA-CCL2-5972 |
| 6086 |
chr17:32728933 |
1014 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
rs3917888 |
IIPGA-CCL2-6086 |
| 6614 |
chr17:32729461 |
1542 C/T |
|
C (79) |
T (15) |
|
|
16% |
C |
C |
rs13900 |
IIPGA-CCL2-6614 |
| 6774 |
chr17:32729621 |
1702 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
rs2215182 |
IIPGA-CCL2-6774 |
| 7138 |
chr17:32729985 |
2066 A/C |
|
A (93) |
C (1) |
|
|
1% |
A |
A |
rs2190971 |
IIPGA-CCL2-7138 |
| 7411 |
chr17:32730258 |
2339 T |
|
T (90) |
X (2) |
|
|
2% |
T |
T |
IIPGA-CCL2-7411 |
IIPGA-CCL2-7411 |
| 7472 |
chr17:32730319 |
2400 C/T |
|
C (91) |
T (1) |
|
|
1% |
C |
C |
rs3917889 |
IIPGA-CCL2-7472 |
| 7485 |
chr17:32730332 |
2413 G/T |
|
G (87) |
T (5) |
|
|
5% |
G |
G |
rs3917890 |
IIPGA-CCL2-7485 |
| 7652 |
chr17:32730499 |
2580 A/T |
|
T (87) |
A (5) |
|
|
5% |
T |
T |
IIPGA-CCL2-7652 |
IIPGA-CCL2-7652 |
| 7778 |
chr17:32730625 |
2706 A/G |
|
A (91) |
G (1) |
|
|
1% |
A |
A |
IIPGA-CCL2-7778 |
IIPGA-CCL2-7778 |
|
|
|
| © 2001-2004, Alberto Riva, CHIP |