 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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| Prettybase importer |
| Gene: |
CCL5 |
Region searched: |
chr17:34334047-34362927 |
| Match orientation: |
Reverse complemented |
Processing time: |
0.99 seconds |
| Total SNPs: |
35 |
Correct: |
35 |
|
|
| Imported SNPs |
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 4180 |
chr17:34353748 |
-889 A/T |
|
A (84) |
T (2) |
|
|
2% |
A |
A |
|
IIPGA-CCL5-4180 |
| 4188 |
chr17:34353740 |
-881 A/G |
|
A (85) |
G (1) |
|
|
1% |
G |
G |
rs4239253 |
IIPGA-CCL5-4188 |
| 4598 |
chr17:34353330 |
-471 A/G |
|
G (54) |
A (32) |
|
|
35% |
G |
G |
rs2107538 |
IIPGA-CCL5-4598 |
| 4892 |
chr17:34353036 |
-177 C/T |
|
T (92) |
C (2) |
|
|
2% |
T |
T |
rs1800825 |
IIPGA-CCL5-4892 |
| 5243 |
chr17:34352685 |
174 A/G |
|
A (93) |
G (1) |
|
|
1% |
A |
A |
|
IIPGA-CCL5-5243 |
| 5375 |
chr17:34352553 |
306 C/T |
|
T (80) |
C (14) |
|
|
15% |
T |
T |
rs2280789 |
IIPGA-CCL5-5375 |
| 5681 |
chr17:34352247 |
612 C/T |
|
T (92) |
C (2) |
|
|
2% |
T |
T |
|
IIPGA-CCL5-5681 |
| 6046 |
chr17:34351882 |
977 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-CCL5-6046 |
| 6633 |
chr17:34351295 |
1564 A/G |
|
A (91) |
G (3) |
|
|
3% |
A |
A |
|
IIPGA-CCL5-6633 |
| 6678 |
chr17:34351250 |
1609 A/G |
|
G (89) |
A (5) |
|
|
5% |
G |
G |
|
IIPGA-CCL5-6678 |
| 9384 |
chr17:34348544 |
4315 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-CCL5-9384 |
| 9442 |
chr17:34348486 |
4373 A/G |
|
A (93) |
G (1) |
|
|
1% |
A |
A |
|
IIPGA-CCL5-9442 |
| 9604 |
chr17:34348324 |
4535 G/T |
|
G (89) |
T (5) |
|
|
5% |
G |
G |
|
IIPGA-CCL5-9604 |
| 9710 |
chr17:34348218 |
4641 G/T |
|
T (85) |
G (9) |
|
|
10% |
T |
T |
|
IIPGA-CCL5-9710 |
| 9809 |
chr17:34348119 |
4740 C/G |
|
G (93) |
C (1) |
|
|
1% |
G |
G |
|
IIPGA-CCL5-9809 |
| 9952 |
chr17:34347976 |
4883 A/T |
|
A (93) |
T (1) |
|
|
1% |
A |
A |
|
IIPGA-CCL5-9952 |
| 10081 |
chr17:34347847 |
5012 A/C |
|
C (79) |
A (15) |
|
|
16% |
C |
C |
|
IIPGA-CCL5-10081 |
| 10199 |
chr17:34347729 |
5130 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-CCL5-10199 |
| 10607 |
chr17:34347321 |
5538 G/T |
|
G (75) |
T (13) |
|
|
14% |
G |
G |
|
IIPGA-CCL5-10607 |
| 11487 |
chr17:34346441 |
6418 C/T |
|
T (80) |
C (6) |
|
|
7% |
T |
T |
rs4796120 |
IIPGA-CCL5-11487 |
| 11801 |
chr17:34346127 |
6732 |
|
X (90) |
|
|
|
|
C |
C |
|
IIPGA-CCL5-11801 |
| 11903 |
chr17:34346025 |
6834 C/T |
|
C (91) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-CCL5-11903 |
| 11907 |
chr17:34346021 |
6838 C/T |
|
T (91) |
C (1) |
|
|
1% |
T |
T |
|
IIPGA-CCL5-11907 |
| 12380 |
chr17:34345548 |
7311 C/T |
|
C (59) |
T (35) |
|
|
37% |
C |
C |
rs8069014 |
IIPGA-CCL5-12380 |
| 12474 |
chr17:34345454 |
7405 A/T |
|
T (78) |
A (16) |
|
|
17% |
T |
T |
|
IIPGA-CCL5-12474 |
| 12541 |
chr17:34345387 |
7472 A/T |
|
T (87) |
A (1) |
|
|
1% |
T |
T |
|
IIPGA-CCL5-12541 |
| 12737 |
chr17:34345191 |
7668 A/T |
|
T (60) |
A (34) |
|
|
36% |
T |
T |
rs3817655 |
IIPGA-CCL5-12737 |
| 12740 |
chr17:34345188 |
7671 A/G |
|
G (90) |
A (4) |
|
|
4% |
G |
G |
|
IIPGA-CCL5-12740 |
| 13216 |
chr17:34344712 |
8147 C/T |
|
T (85) |
C (7) |
|
|
7% |
T |
T |
|
IIPGA-CCL5-13216 |
| 13429 |
chr17:34344499 |
8360 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
|
IIPGA-CCL5-13429 |
| 13504 |
chr17:34344424 |
8435 A/G |
|
A (91) |
G (1) |
|
|
1% |
A |
A |
|
IIPGA-CCL5-13504 |
| 13785 |
chr17:34344143 |
8716 A/G |
|
A (75) |
G (19) |
|
|
20% |
A |
A |
rs1065341 |
IIPGA-CCL5-13785 |
| 13804 |
chr17:34344124 |
8735 A/G |
|
G (92) |
A (2) |
|
|
2% |
G |
G |
|
IIPGA-CCL5-13804 |
| 14395 |
chr17:34343533 |
9326 A/G |
|
G (78) |
A (16) |
|
|
17% |
G |
G |
|
IIPGA-CCL5-14395 |
| 14401 |
chr17:34343527 |
9332 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
|
IIPGA-CCL5-14401 |
|
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| © 2001-2004, Alberto Riva, CHIP |