 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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| Prettybase importer |
| Gene: |
IL17F |
Region searched: |
chr6:52138322-52160801 |
| Match orientation: |
Reverse complemented |
Processing time: |
1.14 seconds |
| Total SNPs: |
52 |
Correct: |
52 |
|
|
| Imported SNPs |
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 2808 |
chr6:52158256 |
-7801 C/T
-2193 C/T |
|
T (89) |
C (5) |
|
|
5% |
T |
T |
IIPGA-IL17F-2808 |
IIPGA-IL17F-2808 |
| 3054 |
chr6:52158010 |
-7555 A/C
-1947 A/C |
|
C (93) |
A (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-3054 |
IIPGA-IL17F-3054 |
| 3071 |
chr6:52157993 |
-7538 C/T
-1930 C/T |
|
C (89) |
T (5) |
|
|
5% |
C |
C |
IIPGA-IL17F-3071 |
IIPGA-IL17F-3071 |
| 3101 |
chr6:52157963 |
-7508 A
-1900 A |
|
A (86) |
X (8) |
|
|
9% |
A |
A |
IIPGA-IL17F-3101 |
IIPGA-IL17F-3101 |
| 3127 |
chr6:52157937 |
-7482 C/T
-1874 C/T |
|
T (87) |
C (7) |
|
|
7% |
T |
T |
rs677901 |
IIPGA-IL17F-3127 |
| 3211 |
chr6:52157853 |
-7398 A/G
-1790 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
IIPGA-IL17F-3211 |
IIPGA-IL17F-3211 |
| 3272 |
chr6:52157792 |
-7337 C/T
-1729 C/T |
|
T (86) |
C (8) |
|
|
9% |
T |
T |
rs4715290 |
IIPGA-IL17F-3272 |
| 3356 |
chr6:52157708 |
-7253 C/T
-1645 C/T |
|
T (90) |
C (2) |
|
|
2% |
T |
T |
IIPGA-IL17F-3356 |
IIPGA-IL17F-3356 |
| 3494 |
chr6:52157570 |
-7115 A/G
-1507 A/G |
|
G (60) |
A (34) |
|
|
36% |
G |
G |
rs1889570 |
IIPGA-IL17F-3494 |
| 4130 |
chr6:52156934 |
-6479 A/G
-871 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
IIPGA-IL17F-4130 |
IIPGA-IL17F-4130 |
| 4215 |
chr6:52156849 |
-6394 C/T
-786 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
IIPGA-IL17F-4215 |
IIPGA-IL17F-4215 |
| 4234 |
chr6:52156830 |
-6375 C/T
-767 C/T |
|
T (90) |
C (4) |
|
|
4% |
T |
T |
IIPGA-IL17F-4234 |
IIPGA-IL17F-4234 |
| 4437 |
chr6:52156627 |
-6172 A/C
-564 A/C |
|
C (93) |
A (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-4437 |
IIPGA-IL17F-4437 |
| 4492 |
chr6:52156572 |
-6117 A/G
-509 A/G |
|
A (91) |
G (3) |
|
|
3% |
A |
A |
IIPGA-IL17F-4492 |
IIPGA-IL17F-4492 |
| 4607 |
chr6:52156457 |
-6002 A/G
-394 A/G |
|
A (90) |
G (4) |
|
|
4% |
A |
A |
rs597506 |
IIPGA-IL17F-4607 |
| 4842 |
chr6:52156222 |
-5767 C/T
-159 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-4842 |
IIPGA-IL17F-4842 |
| 5223 |
chr6:52155841 |
-5386 A/C
222 A/C |
|
A (75) |
C (19) |
|
|
20% |
A |
A |
rs2294834 |
IIPGA-IL17F-5223 |
| 5326 |
chr6:52155738 |
-5283 C/T
325 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
IIPGA-IL17F-5326 |
IIPGA-IL17F-5326 |
| 5375 |
chr6:52155689 |
-5234 C/T
374 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-5375 |
IIPGA-IL17F-5375 |
| 5451 |
chr6:52155613 |
-5158 C/T
450 C/T |
|
C (56) |
T (38) |
|
|
40% |
T |
T |
rs7382386 |
IIPGA-IL17F-5451 |
| 5542 |
chr6:52155522 |
-5067 A/C
541 A/C |
|
C (81) |
A (13) |
|
|
14% |
C |
C |
rs4715288 |
IIPGA-IL17F-5542 |
| 5644 |
chr6:52155420 |
-4965 C/T
643 C/T |
|
T (90) |
C (4) |
|
|
4% |
T |
T |
IIPGA-IL17F-5644 |
IIPGA-IL17F-5644 |
| 5675 |
chr6:52155389 |
-4934 C/T
674 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-5675 |
IIPGA-IL17F-5675 |
| 6166 |
chr6:52154898 |
-4443 C/T
1165 C/T |
|
T (67) |
C (27) |
|
|
29% |
C |
C |
rs1266828 |
IIPGA-IL17F-6166 |
| 6323 |
chr6:52154741 |
-4286 C/G
1322 C/G |
|
C (85) |
G (5) |
|
|
5% |
C |
C |
IIPGA-IL17F-6323 |
IIPGA-IL17F-6323 |
| 6388 |
chr6:52154676 |
-4221 A/T
1387 A/T |
|
T (87) |
A (5) |
|
|
5% |
T |
T |
IIPGA-IL17F-6388 |
IIPGA-IL17F-6388 |
| 6951 |
chr6:52154113 |
-3658 C/T
1950 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
IIPGA-IL17F-6951 |
IIPGA-IL17F-6951 |
| 7037 |
chr6:52154027 |
-3572 C/T
2036 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
IIPGA-IL17F-7037 |
IIPGA-IL17F-7037 |
| 7214 |
chr6:52153850 |
-3395 G/T
2213 G/T |
|
G (93) |
T (1) |
|
|
1% |
G |
G |
IIPGA-IL17F-7214 |
IIPGA-IL17F-7214 |
| 7368 |
chr6:52153696 |
-3241 C/T
2367 C/T |
|
C (57) |
T (37) |
|
|
39% |
C |
C |
rs722323 |
IIPGA-IL17F-7368 |
| 7428 |
chr6:52153636 |
-3181 A/G
2427 A/G |
|
G (92) |
A (2) |
|
|
2% |
G |
G |
IIPGA-IL17F-7428 |
IIPGA-IL17F-7428 |
| 7462 |
chr6:52153602 |
-3147 C/T
2461 C/T |
|
C (93) |
T (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-7462 |
IIPGA-IL17F-7462 |
| 10046 |
chr6:52151018 |
-563 A/G
5045 A/G |
|
G (85) |
A (9) |
|
|
10% |
G |
G |
rs7771511 |
IIPGA-IL17F-10046 |
| 10119 |
chr6:52150945 |
-490 G/T
5118 G/T |
|
G (86) |
T (8) |
|
|
9% |
G |
G |
rs7771466 |
IIPGA-IL17F-10119 |
| 10364 |
chr6:52150700 |
-245 A/G
5363 A/G |
|
A (90) |
G (4) |
|
|
4% |
A |
A |
IIPGA-IL17F-10364 |
IIPGA-IL17F-10364 |
| 10668 |
chr6:52150396 |
59 C/T
5667 C/T |
|
C (91) |
T (1) |
|
|
1% |
C |
C |
rs6931727 |
IIPGA-IL17F-10668 |
| 11068 |
chr6:52149996 |
459 C/G
6067 C/G |
|
C (75) |
G (17) |
|
|
18% |
C |
C |
rs612242 |
IIPGA-IL17F-11068 |
| 12384 |
chr6:52148680 |
1775 A/G
7383 A/G |
|
A (90) |
G (4) |
|
|
4% |
A |
A |
rs2397084 |
IIPGA-IL17F-12384 |
| 12420 |
chr6:52148644 |
1811 C
7419 C |
|
C (91) |
X (1) |
|
|
1% |
C |
C |
IIPGA-IL17F-12420 |
IIPGA-IL17F-12420 |
| 12470 |
chr6:52148594 |
1861 A/G
7469 A/G |
|
G (90) |
A (4) |
|
|
4% |
G |
G |
IIPGA-IL17F-12470 |
IIPGA-IL17F-12470 |
| 12489 |
chr6:52148575 |
1880 A/G
7488 A/G |
|
A (86) |
G (8) |
|
|
9% |
A |
A |
rs763780 |
IIPGA-IL17F-12489 |
| 12635 |
chr6:52148429 |
2026 A/G
7634 A/G |
|
A (92) |
G (2) |
|
|
2% |
A |
A |
IIPGA-IL17F-12635 |
IIPGA-IL17F-12635 |
| 12742 |
chr6:52148322 |
2133 G/T
7741 G/T |
|
T (90) |
G (4) |
|
|
4% |
T |
T |
rs1953325 |
IIPGA-IL17F-12742 |
| 12794 |
chr6:52148270 |
2185 A/G
7793 A/G |
|
G (93) |
A (1) |
|
|
1% |
G |
G |
IIPGA-IL17F-12794 |
IIPGA-IL17F-12794 |
| 13017 |
chr6:52148047 |
2408 A/T
8016 A/T |
|
A (87) |
T (3) |
|
|
3% |
A |
A |
IIPGA-IL17F-13017 |
IIPGA-IL17F-13017 |
| 13063 |
chr6:52148001 |
2454 C/G
8062 C/G |
|
G (77) |
C (13) |
|
|
14% |
G |
G |
rs641701 |
IIPGA-IL17F-13063 |
| 13122 |
chr6:52147942 |
2513 A/G
8121 A/G |
|
G (89) |
A (1) |
|
|
1% |
G |
G |
IIPGA-IL17F-13122 |
IIPGA-IL17F-13122 |
| 13202 |
chr6:52147862 |
2593 C/G
8201 C/G |
|
G (91) |
C (1) |
|
|
1% |
G |
G |
IIPGA-IL17F-13202 |
IIPGA-IL17F-13202 |
| 13207 |
chr6:52147857 |
2598 C/T
8206 C/T |
|
C (88) |
T (4) |
|
|
4% |
C |
C |
IIPGA-IL17F-13207 |
IIPGA-IL17F-13207 |
| 13324 |
chr6:52147740 |
2715 C/T
8323 C/T |
|
C (90) |
T (2) |
|
|
2% |
C |
C |
IIPGA-IL17F-13324 |
IIPGA-IL17F-13324 |
| 13327 |
chr6:52147737 |
2718 C/T
8326 C/T |
|
C (88) |
T (4) |
|
|
4% |
C |
C |
rs508388 |
IIPGA-IL17F-13327 |
| 13488 |
chr6:52147576 |
2879 A/G
8487 A/G |
|
G (88) |
A (4) |
|
|
4% |
G |
G |
IIPGA-IL17F-13488 |
IIPGA-IL17F-13488 |
|
|
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| © 2001-2004, Alberto Riva, CHIP |