 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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| Prettybase importer |
| Gene: |
IRAK1 |
Region searched: |
chrX:151733866-151763246 |
| Match orientation: |
Reverse complemented |
Processing time: |
1.03 seconds |
| Total SNPs: |
30 |
Correct: |
30 |
|
|
| Imported SNPs |
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 5597 |
chrX:151752650 |
517 C/T |
113 T/I |
C (91) |
T (3) |
|
|
3% |
C |
C |
IIPGA-IRAK1-5597 |
IIPGA-IRAK1-5597 |
| 5860 |
chrX:151752387 |
780 C/T |
|
T (49) |
C (43) |
|
|
46% |
C |
C |
rs1059701 |
IIPGA-IRAK1-5860 |
| 6145 |
chrX:151752102 |
1065 A/G |
|
G (87) |
A (7) |
|
|
7% |
G |
G |
IIPGA-IRAK1-6145 |
IIPGA-IRAK1-6145 |
| 6151 |
chrX:151752096 |
1071 C/T |
|
C (79) |
T (15) |
|
|
16% |
T |
T |
rs1059702 |
IIPGA-IRAK1-6151 |
| 6171 |
chrX:151752076 |
1091 A/T |
|
T (92) |
A (2) |
|
|
2% |
T |
T |
IIPGA-IRAK1-6171 |
IIPGA-IRAK1-6171 |
| 6471 |
chrX:151751776 |
1391 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
IIPGA-IRAK1-6471 |
IIPGA-IRAK1-6471 |
| 6623 |
chrX:151751624 |
1543 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
IIPGA-IRAK1-6623 |
IIPGA-IRAK1-6623 |
| 7132 |
chrX:151751115 |
2052 G/T |
|
G (92) |
T (2) |
|
|
2% |
G |
G |
IIPGA-IRAK1-7132 |
IIPGA-IRAK1-7132 |
| 7233 |
chrX:151751014 |
2153 C/G |
|
C (92) |
G (2) |
|
|
2% |
C |
C |
IIPGA-IRAK1-7233 |
IIPGA-IRAK1-7233 |
| 7666 |
chrX:151750581 |
2586 G/T |
|
G (88) |
T (6) |
|
|
6% |
G |
G |
IIPGA-IRAK1-7666 |
IIPGA-IRAK1-7666 |
| 8003 |
chrX:151750244 |
2923 A/C |
|
C (93) |
A (1) |
|
|
1% |
C |
C |
IIPGA-IRAK1-8003 |
IIPGA-IRAK1-8003 |
| 8924 |
chrX:151749323 |
3844 C |
|
C (93) |
X (1) |
|
|
1% |
C |
C |
IIPGA-IRAK1-8924 |
IIPGA-IRAK1-8924 |
| 9868 |
chrX:151748379 |
4788 C/T |
|
T (60) |
C (34) |
|
|
36% |
C |
C |
rs7061789 |
IIPGA-IRAK1-9868 |
| 9891 |
chrX:151748356 |
4811 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
IIPGA-IRAK1-9891 |
IIPGA-IRAK1-9891 |
| 10076 |
chrX:151748171 |
4996 C/T |
|
T (93) |
C (1) |
|
|
1% |
T |
T |
IIPGA-IRAK1-10076 |
IIPGA-IRAK1-10076 |
| 10485 |
chrX:151747762 |
5405 C/T |
|
T (63) |
C (29) |
|
|
32% |
C |
C |
rs5945174 |
IIPGA-IRAK1-10485 |
| 10898 |
chrX:151747349 |
5818 C/T |
|
T (90) |
C (4) |
|
|
4% |
T |
T |
rs3027907 |
IIPGA-IRAK1-10898 |
| 11372 |
chrX:151746875 |
6292 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
rs3027906 |
IIPGA-IRAK1-11372 |
| 11514 |
chrX:151746733 |
6434 C/T |
|
T (71) |
C (23) |
|
|
24% |
C |
C |
rs1059703 |
IIPGA-IRAK1-11514 |
| 12029 |
chrX:151746218 |
6949 C/T |
|
C (91) |
T (3) |
|
|
3% |
C |
C |
IIPGA-IRAK1-12029 |
IIPGA-IRAK1-12029 |
| 12036 |
chrX:151746211 |
6956 C/T |
|
T (63) |
C (31) |
|
|
33% |
C |
C |
rs763737 |
IIPGA-IRAK1-12036 |
| 12397 |
chrX:151745850 |
7317 A/G |
|
A (92) |
G (2) |
|
|
2% |
A |
A |
IIPGA-IRAK1-12397 |
IIPGA-IRAK1-12397 |
| 12454 |
chrX:151745793 |
7374 A/G |
|
A (65) |
G (29) |
|
|
31% |
G |
G |
rs2239673 |
IIPGA-IRAK1-12454 |
| 12491 |
chrX:151745756 |
7411 C/T |
|
C (90) |
T (2) |
|
|
2% |
C |
C |
IIPGA-IRAK1-12491 |
IIPGA-IRAK1-12491 |
| 12593 |
chrX:151745654 |
7513 C/T |
|
C (92) |
T (2) |
|
|
2% |
C |
C |
rs3027903 |
IIPGA-IRAK1-12593 |
| 12836 |
chrX:151745411 |
7756 C/T |
|
C (68) |
T (26) |
|
|
28% |
T |
T |
rs731642 |
IIPGA-IRAK1-12836 |
| 12848 |
chrX:151745399 |
7768 C |
|
C (93) |
X (1) |
|
|
1% |
C |
C |
IIPGA-IRAK1-12848 |
IIPGA-IRAK1-12848 |
| 12872 |
chrX:151745375 |
7792 A/G |
|
G (89) |
A (3) |
|
|
3% |
G |
G |
rs3027902 |
IIPGA-IRAK1-12872 |
| 13986 |
chrX:151744261 |
8906 A/G |
|
G (92) |
A (2) |
|
|
2% |
G |
G |
rs3027899 |
IIPGA-IRAK1-13986 |
| 14453 |
chrX:151743794 |
9373 G/T |
|
T (63) |
G (31) |
|
|
33% |
G |
G |
rs3027898 |
IIPGA-IRAK1-14453 |
|
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| © 2001-2004, Alberto Riva, CHIP |