SNPper - IIPGA PrettyBase Importer Goldenpath: hg16
dbSNP: build 118
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Prettybase importer
Gene: LBP Region searched: chr20:37650314-37701082
Match orientation: Forward Processing time: 11.88 seconds
Total SNPs: 142 Correct: 140

Imported SNPs
Position in
refseq
Absolute
position
Relative
positions
AA
change
All 1 All 2 All 3 All 4 Minor allele
frequency
Base in
refseq
Known base
(from GoldenPath)
Known SNP
(from dbSNP)
Assigned name
167 chr20:37657997 -2352 C/T   C (92) T (2)     2% C C   IIPGA-LBP-167
340 chr20:37658170 -2179 G/T   T (93) G (1)     1% T T   IIPGA-LBP-340
444 chr20:37658274 -2075 G/T   G (91) T (3)     3% G G rs5744197 IIPGA-LBP-444
541 chr20:37658371 -1978 C/T   C (64) T (30)     32% T C rs1780616 IIPGA-LBP-541
1070 chr20:37658900 -1449 C/T   C (85) T (1)     1% C C rs5744198 IIPGA-LBP-1070
1271 chr20:37659101 -1248 A/C   C (85) A (1)     1% C C rs5744199 IIPGA-LBP-1271
1283 chr20:37659113 -1236 A/T   T (79) A (7)     7% T T rs5741811 IIPGA-LBP-1283
1598 chr20:37659428 -921 A/T   A (75) T (15)     16% T A rs5741812 IIPGA-LBP-1598
1600 chr20:37659430 -919 C/T   T (87) C (1)     1% T T   IIPGA-LBP-1600
1683 chr20:37659513 -836 C/T   T (69) C (17)     18% C T rs2232571 IIPGA-LBP-1683
1733 chr20:37659563 -786 A/T   T (81) A (5)     5% T T rs2232572 IIPGA-LBP-1733
1756 chr20:37659586 -763 A/G   A (73) G (15)     16% A A rs1780617 IIPGA-LBP-1756
1893 chr20:37659723 -626 C/T   T (82) C (6)     6% T T rs2232573 IIPGA-LBP-1893
2111 chr20:37659941 -408 C/G   G (84) C (10)     11% G G rs2232575 IIPGA-LBP-2111
2122 chr20:37659952 -397 A/G   G (93) A (1)     1% G G rs5744200 IIPGA-LBP-2122
2196 chr20:37660026 -323 G/T   G (82) T (12)     13% T G rs2232577 IIPGA-LBP-2196
2314 chr20:37660144 -205 A/G   A (77) G (17)     18% A A rs2232578 IIPGA-LBP-2314
2482 chr20:37660312 -37 C/T   C (90) T (4)     4% C C rs2232579 IIPGA-LBP-2482
2544 chr20:37660374 25 C/T 9 P/L C (90) T (4)     4% C C rs2232580 IIPGA-LBP-2544
3076 chr20:37660906 557 C/T   C (91) T (1)     1% C C   IIPGA-LBP-3076
3080 chr20:37660910 561 A/G   A (90) G (2)     2% A A   IIPGA-LBP-3080
3702 chr20:37661532 1183 A/G   A (86) G (6)     6% A A rs7267449 IIPGA-LBP-3702
3926 chr20:37661756 1407 A/G   A (85) G (7)     7% A A rs7267600 IIPGA-LBP-3926
4302 chr20:37662132 1783 A/G   A (83) G (5)     5% A A rs8120088 IIPGA-LBP-4302
4507 chr20:37662337 1988 A/G   G (82) A (10)     11% G G rs6025049 IIPGA-LBP-4507
4841 chr20:37662656 2307 C/G   G (83) C (11)     12% G G rs6099236 IIPGA-LBP-4841
5138 chr20:37662953 2604 C/T   C (89) T (5)     5% C C   IIPGA-LBP-5138
5250 chr20:37663065 2716 A/G   G (89) A (5)     5% G G   IIPGA-LBP-5250
5584 chr20:37663399 3050 A/G 48 L/L G (88) A (6)     6% G G rs1739654 IIPGA-LBP-5584
5796 chr20:37663611 3262 A/G   G (88) A (6)     6% G G rs1739655 IIPGA-LBP-5796
5838 chr20:37663653 3304 A/G   G (93) A (1)     1% G G rs5744202 IIPGA-LBP-5838
6557 [not matched: no matching sequences] IIPGA-LBP-6557
6624 chr20:37664440 4091 A/G   A (72) G (22)     23% A A rs5741813 IIPGA-LBP-6624
6662 chr20:37664478 4129 C/T   C (84) T (10)     11% C C rs5741814 IIPGA-LBP-6662
6746 chr20:37664562 4213 G/T   T (72) G (22)     23% T T rs2232581 IIPGA-LBP-6746
6863 chr20:37664679 4330 A/G 92 A/A G (93) A (1)     1% G G rs5744203 IIPGA-LBP-6863
6878 chr20:37664694 4345 C/T 97 P/P T (72) C (22)     23% T T rs2232582 IIPGA-LBP-6878
7127 chr20:37664943 4594 C/T   T (72) C (22)     23% T T rs5741815 IIPGA-LBP-7127
7339 chr20:37665155 4806 A/G   G (90) A (4)     4% G G   IIPGA-LBP-7339
7400 chr20:37665216 4867 C/T   C (50) T (44)     47% T T rs6025083 IIPGA-LBP-7400
7445 chr20:37665261 4912 A/G   G (81) A (13)     14% G G   IIPGA-LBP-7445
10424 chr20:37668240 7891 A/G 166 V/M G (79) A (11)     12% A G rs5744204 IIPGA-LBP-10424
10480 chr20:37668296 7947 C/T   T (85) C (5)     5% T T rs2232587 IIPGA-LBP-10480
10595 chr20:37668411 8062 A/G   G (71) A (15)     16% A G rs5741816 IIPGA-LBP-10595
11279 chr20:37669095 8746 A/C   C (91) A (1)     1% C C   IIPGA-LBP-11279
11283 chr20:37669099 8750 C/G   C (79) G (13)     14% G C rs2232590 IIPGA-LBP-11283
11287 chr20:37669103 8754 G/T   G (91) T (1)     1% G G   IIPGA-LBP-11287
11470 chr20:37669278 8929 A/G   G (91) A (3)     3% G G rs2232592 IIPGA-LBP-11470
11472 chr20:37669280 8931 A/G   G (93) A (1)     1% G G rs5744205 IIPGA-LBP-11472
11600 chr20:37669408 9059 C/T   C (92) T (2)     2% C C rs2232593 IIPGA-LBP-11600
11628 chr20:37669436 9087 A/G   G (80) A (14)     15% G G rs5744206 IIPGA-LBP-11628
11635 chr20:37669443 9094 C/T   C (93) T (1)     1% C C rs5744207 IIPGA-LBP-11635
11724 chr20:37669532 9183 C/T   C (93) T (1)     1% C C rs5744208 IIPGA-LBP-11724
13506 chr20:37671314 10965 G/T   G (84) T (10)     11% G G   IIPGA-LBP-13506
13656 chr20:37671464 11115 C/T   C (92) T (2)     2% C C rs6127841 IIPGA-LBP-13656
13901 chr20:37671709 11360 A/C   A (93) C (1)     1% A A   IIPGA-LBP-13901
14974 chr20:37672781 12432 C/T   C (86) T (2)     2% C C rs6127849 IIPGA-LBP-14974
15143 chr20:37672950 12601 A/G   G (85) A (9)     10% G G   IIPGA-LBP-15143
15180 chr20:37672987 12638 A/T   A (93) T (1)     1% A A   IIPGA-LBP-15180
15282 chr20:37673089 12740 C/G   C (91) G (3)     3% C C rs6123629 IIPGA-LBP-15282
15378 [not matched: no matching sequences] IIPGA-LBP-15378
15441 chr20:37673247 12898 C/T   T (87) C (7)     7% T T rs6069875 IIPGA-LBP-15441
15508 chr20:37673314 12965 G/T   T (86) G (8)     9% T T rs6069876 IIPGA-LBP-15508
15553 chr20:37673359 13010 A/G   A (90) G (4)     4% A A   IIPGA-LBP-15553
15596 chr20:37673402 13053 G/T   G (93) T (1)     1% G G   IIPGA-LBP-15596
15636 chr20:37673442 13093 C/T   C (93) T (1)     1% C C   IIPGA-LBP-15636
15701 chr20:37673507 13158 A/T   T (93) A (1)     1% T T   IIPGA-LBP-15701
15935 chr20:37673742 13393 A/G   A (91) G (1)     1% A A   IIPGA-LBP-15935
15951 chr20:37673758 13409 A/G   A (87) G (5)     5% A A   IIPGA-LBP-15951
15976 chr20:37673783 13434 G/T   T (88) G (4)     4% T T   IIPGA-LBP-15976
16055 chr20:37673862 13513 C/T   T (91) C (1)     1% T T   IIPGA-LBP-16055
16113 chr20:37673920 13571 A/G   G (91) A (1)     1% G G   IIPGA-LBP-16113
16265 chr20:37674072 13723 C/T   C (91) T (1)     1% C C   IIPGA-LBP-16265
16280 chr20:37674087 13738 A/C   C (91) A (1)     1% C C   IIPGA-LBP-16280
16956 chr20:37674764 14415 C/T   C (91) T (3)     3% C C rs2232595 IIPGA-LBP-16956
17002 chr20:37674810 14461 A/G 204 S/S A (58) G (36)     38% A G rs2232596 IIPGA-LBP-17002
18829 chr20:37676637 16288 A/G   G (87) A (7)     7% G G   IIPGA-LBP-18829
18845 chr20:37676653 16304 G/T   G (87) T (7)     7% G G   IIPGA-LBP-18845
18881 chr20:37676689 16340 C/T   C (92) T (2)     2% C C   IIPGA-LBP-18881
19041 chr20:37676849 16500 A/G   A (87) G (7)     7% A A   IIPGA-LBP-19041
19172 chr20:37676980 16631 A/G   G (87) A (7)     7% G G   IIPGA-LBP-19172
19198 chr20:37677006 16657 A/G   G (92) A (2)     2% G G rs6127861 IIPGA-LBP-19198
19272 chr20:37677080 16731 C/T   T (93) C (1)     1% T T   IIPGA-LBP-19272
19275 chr20:37677083 16734 A/G   A (93) G (1)     1% A A   IIPGA-LBP-19275
19512 chr20:37677320 16971 C/T   T (87) C (7)     7% T T   IIPGA-LBP-19512
19564 chr20:37677372 17023 A/G   A (85) G (1)     1% A A   IIPGA-LBP-19564
19745 chr20:37677553 17204 C/T   C (81) T (7)     7% C C   IIPGA-LBP-19745
20012 chr20:37677820 17471 C/T   T (50) C (44)     47% C C rs5741817 IIPGA-LBP-20012
20093 chr20:37677901 17552 C/G   G (86) C (8)     9% G G rs2232599 IIPGA-LBP-20093
20348 chr20:37678156 17807 A/G   G (89) A (1)     1% G G   IIPGA-LBP-20348
20417 chr20:37678225 17876 C/G   C (89) G (1)     1% C C   IIPGA-LBP-20417
20431 chr20:37678239 17890 A/G   G (82) A (8)     9% G G rs2232602 IIPGA-LBP-20431
20470 chr20:37678278 17929 A/G   G (89) A (1)     1% G G   IIPGA-LBP-20470
20800 chr20:37678608 18259 C/G   G (90) C (4)     4% G G rs2232605 IIPGA-LBP-20800
20827 chr20:37678635 18286 A/G   A (85) G (9)     10% A A rs2232606 IIPGA-LBP-20827
20954 chr20:37678762 18413 A/G 283 D/G A (93) G (1)     1% A A rs2232607 IIPGA-LBP-20954
21197 chr20:37679005 18656 A/G   A (92) G (2)     2% A A rs5744210 IIPGA-LBP-21197
22464 chr20:37680272 19923 C/T   C (93) T (1)     1% C C   IIPGA-LBP-22464
22526 chr20:37680334 19985 A/G   G (93) A (1)     1% G G rs6025198 IIPGA-LBP-22526
22535 chr20:37680343 19994 A/G   A (90) G (4)     4% A A   IIPGA-LBP-22535
22630 chr20:37680438 20089 C/G   C (93) G (1)     1% C C   IIPGA-LBP-22630
22655 chr20:37680463 20114 A/C   C (92) A (2)     2% C C   IIPGA-LBP-22655
22670 chr20:37680478 20129 A/G   A (91) G (3)     3% A A   IIPGA-LBP-22670
22737 chr20:37680545 20196 C/T   T (93) C (1)     1% T T rs6014840 IIPGA-LBP-22737
22848 chr20:37680656 20307 A/G   G (93) A (1)     1% G G rs5741818 IIPGA-LBP-22848
22961 chr20:37680769 20420 C/T   T (58) C (36)     38% T C rs1739639 IIPGA-LBP-22961
23017 chr20:37680825 20476 A/G   A (93) G (1)     1% A A rs2232609 IIPGA-LBP-23017
23084 chr20:37680892 20543 C/T 324 F/F C (92) T (2)     2% C C rs5744211 IIPGA-LBP-23084
24871 chr20:37682679 22330 C/T   C (93) T (1)     1% C C   IIPGA-LBP-24871
24970 chr20:37682778 22429 G/T   G (72) T (22)     23% G G rs6099309 IIPGA-LBP-24970
25253 chr20:37683061 22712 C/T   C (56) T (38)     40% T T rs1780627 IIPGA-LBP-25253
25276 chr20:37683084 22735 C/T 333 P/L C (87) T (7)     7% C C rs2232613 IIPGA-LBP-25276
25286 chr20:37683094 22745 A/C 336 N/K C (93) A (1)     1% C C   IIPGA-LBP-25286
25293 chr20:37683101 22752 C/T 339 L/F C (93) T (1)     1% C C rs5744212 IIPGA-LBP-25293
25601 chr20:37683409 23060 A/C   C (77) A (3)     3% C C   IIPGA-LBP-25601
26836 chr20:37684644 24295 C/G   G (91) C (3)     3% G G rs5744214 IIPGA-LBP-26836
26916 chr20:37684724 24375 A/G   G (93) A (1)     1% G G rs5744215 IIPGA-LBP-26916
27294 chr20:37685102 24753 A/C   A (71) C (23)     24% A A rs5741819 IIPGA-LBP-27294
27497 chr20:37685305 24956 A   A (89) X (3)     3% A A   IIPGA-LBP-27497
27518 chr20:37685326 24977 C/T   C (71) T (23)     24% C C rs2232616 IIPGA-LBP-27518
27869 chr20:37685677 25328 A/G   A (93) G (1)     1% A A   IIPGA-LBP-27869
27901 chr20:37685709 25360 C/T   C (93) T (1)     1% C C   IIPGA-LBP-27901
28371 chr20:37686178 25829 A/G   G (88) A (4)     4% G G   IIPGA-LBP-28371
28559 chr20:37686366 26017 A/T   T (89) A (5)     5% T T   IIPGA-LBP-28559
28603 chr20:37686410 26061 A/G   G (93) A (1)     1% G G   IIPGA-LBP-28603
28896 chr20:37686703 26354 C/T   T (90) C (4)     4% T T   IIPGA-LBP-28896
28957 chr20:37686764 26415 A/G   G (93) A (1)     1% G G   IIPGA-LBP-28957
28963 chr20:37686770 26421 C/T   T (90) C (4)     4% T T rs5744217 IIPGA-LBP-28963
29031 chr20:37686838 26489 A/T   A (61) T (33)     35% A A rs1780628 IIPGA-LBP-29031
29253 chr20:37687060 26711 C/T   C (82) T (12)     13% C C rs2232617 IIPGA-LBP-29253
29383 chr20:37687190 26841 C/T 436 F/L T (82) C (12)     13% T T rs2232618 IIPGA-LBP-29383
29556 chr20:37687363 27014 C/T   C (54) T (38)     40% T T rs1739640 IIPGA-LBP-29556
29579 chr20:37687386 27037 C/T   T (91) C (1)     1% T T   IIPGA-LBP-29579
29595 chr20:37687402 27053 A/G   G (80) A (12)     13% G G   IIPGA-LBP-29595
29645 chr20:37687452 27103 C/T   C (80) T (12)     13% C C   IIPGA-LBP-29645
30008 chr20:37687815 27466 G   G (81) X (11)     12% G G   IIPGA-LBP-30008
30056 chr20:37687863 27514 G/T   G (93) T (1)     1% G G rs5741820 IIPGA-LBP-30056
30211 chr20:37688018 27669 A/G   G (87) A (5)     5% G G rs2232619 IIPGA-LBP-30211
30213 chr20:37688020 27671 C/T 445 A/T C (87) T (5)     5% C C rs2232620 IIPGA-LBP-30213
30602 chr20:37688409 28060 C/T   C (44) T (32)     35% T T rs1739641 IIPGA-LBP-30602
33158 chr20:37690965 30616 C/T   C (62) T (32)     34% C T rs745144 IIPGA-LBP-33158
33251 chr20:37691058 30709 C/T   C (91) T (3)     3% C C   IIPGA-LBP-33251
© 2001-2004, Alberto Riva, CHIP