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The following information is based on the unmasked version of the consensus sequence. We have also generated data for the masked version of the assembly. There is also an Introduction available if you are looking for a place to get started.

Information
Name NOD2 protein
Source InnateImmunity
Chromosome chr16 (+) (chr16:49288551-49324488)
Accession NM_022162
SNPs 52
Indels 0
Populations 4
Subjects 0
Links [ SNPper ] [ GoldenPath ] [ Gene Image ] [ LocusLink ] [ Omim ] [ PubMed ]
Biological Significance The innate immune system regulates the immediate response to microbial pathogens and is initiated by recognition of specific pathogen components by receptors in host immune cells. NOD1 and NOD2 seem to function as intracellular receptors for LPS. NOD2 has structural homology with both the apoptosis regulators Apaf-1/Ced-4 and a class of plant disease resistant gene products. Like the latter gene products, NOD2 comprises an amino-terminal effector domain, a nucleotide-binding domain and leucine-rich repeats. NOD2 is a cytosolic protein whose expression is restricted to monocytes. The gene has been mapped to chromosome 16q12. It has recently been shown that truncation of the tenth leucin-rich repeat of NOD2 is associated with Crohn's disease. Functional analyses indicate that the disease-associated NOD2 variant is significantly less active than the wild-type protein in conferring responsiveness to bacterial LPS. Other leucine-rich repeat variants have been found to be associated with Chron's disease. ( See Omim for more ... )
SNP Discovery Data
Raw data
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Prettybase
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Refseq (FASTA)
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Dynamic
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SNPper Analysis
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Flanking Sequences
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Sequenom SNP Contexts
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Annotated Refseq (FASTA)
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Primers
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Coverage
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Archive
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Genbank
 
Alleles
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Allele Counts
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Allele Frequencies
   
Genotypes
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Genotype Counts
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Genotype Frequencies
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Genogram by Genotype
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Genogram by ID
Haplotypes
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Phase Output
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Phase2 Output
   
Linkage Disequlibrium
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African American
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European American
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Hispanic American
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Asthmatic
Association Study Data
Raw data

Prettybase

SNPper Import

Flanking Sequences

Sequenom SNP Contexts
Alleles

Allele Counts

Allele Frequencies

Case-Control Analysis
 
Genotypes

Genotype Counts

Genotype Frequencies

Genogram by Genotype

Genogram by ID
Haplotypes

Phase Output
     
Linkage Disequlibrium

Cases

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