Table of contentsIIPGA Website Tools for SNP analysis SNP analysis roadmap Web access to IIPGA tools Benefits For most basic reports, choose the “Prettybase Pipeline” Select data and outputs PowerPoint Presentation Same input, Ordered VG output Images may be downloaded and saved Genotype tables give HWE test Genotypes and HWE Outputs to spreadsheet or plain text Use the exact HWE tool Enter genotype counts Slide 15 Haplotypes and htSNP To use Phase, choose the Phase tool Slide 18 Phase Runner Slide 20 5 htSNP for >5% Haplotypes? Find the 3 sets of size 4 Use pyBEST. Slide 24 Slide 25 Use the prettybase to snphap tool Slide 27 Slide 28 Use the ht SNP tester Slide 30 Slide 31 Slide 32 Slide 33 The Website Team Slide 35 Use the prettybase purifier tool Subset, RAF or missing filters Slide 38 Slide 39 Slide 40 Slide 41 Slide 42 Slide 43 Slide 44 Slide 45 Slide 46 Slide 47 Slide 48 |
Author: Ross Lazarus Homepage: https://innateimmunity.net/ |